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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015903660.1_cds_XP_016453751.1_47847
CDS Infomation

[gene=LOC107778080] [db_xref=GeneID:107778080] [protein=probable auxin efflux carrier component 1c isoform X2] [protein_id=XP_016453751.1] [location=complement(join(198862..198928,199201..199277,199357..199514,199603..199688,199836..200103,200745..201356,201498..201864))] [gbkey=CDS]
Sequence

ATGATCTCACTTTCAGACCTTTACCATGTTCTCACAGCTGTAGTACCACTCTATGTAGCC
ATGATATTGGCTTATGGTTCAGTAAAATGGTGGAAAATTTTCAGCCCTGATCAATGTTCA
GGAATCAACAGATTTGTGGCTCTTTTTGCAGTTCCATTGCTGTCTTTTCACTTCATTTCA
TCCAACAATCCTTATGCCATGAACTACAAGTTCATAGCTGCTGACACTTTGCAAAAAGTT
GTAGTTCTTGGTGTTTTAGCCATTTGGTCAAGAATCAGCTCAAGGGGGTCCCTTGAGTGG
TCCATTACTTTGTTTTCTCTTTCCACTTTACCAAACACTTTAGTTATGGGAATCCCTTTG
TTAAAGGGGGATATTATTTCCTTCAAAATTGACTCTGATGTTATTTCATTAGATGGGAAA
GAACCATTGGAAACTCAAGCTGAAGTTGGTGAAGATGGTAAACTTCATGTAACTGTTAGA
AAATCCTGCAGTTCAAGGTCTGAAGTTTTTTCAAGAATGTCACATGGTCTTAACACTGGT
GTTTCATTAACCCCTAGACCATCAAACTTGTCCAATGCTGAGATTTACTCTTTACAATCT
TCAAGAAATCCAACCCCTAGAGGTTCAAGCTTTAACCACACTGATTTGTACTCAATGGCG
AATGGGAAAAGTGCAAATATGAGTCCTAGGACATCAAATTTTGGTAACATGGGATTTGAT
GAGGAAAGTGGATTTGGTGGGAGGGCAAATGGGGTTTATGGACAGGGGAATGTGGGGTAC
CCTGCACCTGCTAATGCTGGAATTTTTTCACCTGCTACTGGACCTGGGGCTAAAAAGAAG
GCTAATGGAACTGAGGCTGGTAAAGATCTCCACATGTTTGTTTGGAGTTCAAATGCTTCA
CCAGCTTCTGAAGGTGGAATTCATGTGTTCAGAGGAGGAGAATATGGTAAAGAGCCTGGT
GTTGGAGCTCACCCAAAAGATTACAATGATTTTGGCCGAGAAGAGTTCACTTCCGGTAAC
AAGAACCCTAATGGATGTGATCGAGAAGGACCAGTGCTAAAAAAGCTTGGCTCAAGCTCT
ACGGTTGAGCTGTTTCCCAAGACTGCTAATGATACTAAGGCTACTGCTATGCCTCCTGCT
AGTGTTATGACCAGGCTTATTCTGATTATGGTCTGGCGAAAACTTGTTAGGAACCCAAAT
ACTTATTCCAGTCTCATTGGCCTCACTTGGTCCTTGGTCTCATTCAGGTGGAATGTTGAG
ATGCCTGTGATTATAGCCAAATCAATATCTATTCTCTCTGATGCTGGTCTTGGAATGGCA
ATGTTTAGTCTTGGTTTGTTCATGGCGTTGCAGCCTAGAATGATTGCCTGTGGAAAAACA
ATTGCTTCCTTCTCTATGGCAGTGAGATTCATCACTGGTCCAGCAGTCATGGCCGCAGCC
TCCATCGCTGTTGGACTTCGAGGTGTTCTTTTGCACATTGCAATAGTTCAGGCAGCTCTA
CCTCAAGGGATTGTTCCTTTTGTCTTTGCAAAAGAATACAATGTTCATCCCGATATACTG
AGCACAGGGGTTATATTTGGGATGTTAATAGCCCTTCCAATCACTCTGGTCTACTACATT
TTGCTGGGGCTTTGA

Peptide Sequence

PEP ID

XP_016453751.1
PEP Infomation

PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Nicotiana tabacum]
Sequence

MISLSDLYHVLTAVVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIS
SNNPYAMNYKFIAADTLQKVVVLGVLAIWSRISSRGSLEWSITLFSLSTLPNTLVMGIPL
LKGDIISFKIDSDVISLDGKEPLETQAEVGEDGKLHVTVRKSCSSRSEVFSRMSHGLNTG
VSLTPRPSNLSNAEIYSLQSSRNPTPRGSSFNHTDLYSMANGKSANMSPRTSNFGNMGFD
EESGFGGRANGVYGQGNVGYPAPANAGIFSPATGPGAKKKANGTEAGKDLHMFVWSSNAS
PASEGGIHVFRGGEYGKEPGVGAHPKDYNDFGREEFTSGNKNPNGCDREGPVLKKLGSSS
TVELFPKTANDTKATAMPPASVMTRLILIMVWRKLVRNPNTYSSLIGLTWSLVSFRWNVE
MPVIIAKSISILSDAGLGMAMFSLGLFMALQPRMIACGKTIASFSMAVRFITGPAVMAAA
SIAVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYI
LLGL

Transcript Sequence

Gene sequence data has not been registered.